What is alignment view?

The hindfoot alignment view is a specialized, weight-bearing radiographic view that examines the hindfoot alignment as part of a foot and ankle instability investigation. The long axial view requires no equipment and has higher inter-observer reliability when measuring angular hindfoot alignment 1,2.

Is Jalview free?

Jalview is a free program for multiple sequence alignment editing, visualisation and analysis. Use it to view and edit sequence alignments, analyse them with phylogenetic trees and principal components analysis (PCA) plots and explore molecular structures and annotation.

What is clustal alignment?

Clustal Omega is a new multiple sequence alignment program that uses seeded guide trees and HMM profile-profile techniques to generate alignments between three or more sequences. For the alignment of two sequences please instead use our pairwise sequence alignment tools.

What is the Saltzman view?

Saltzman view: It is a tangential weight-bearing postero-anterior view of the hindfoot and leg, demonstrating weight-bearing relationship of the hindfoot with the leg (Fig. 2.18).

What is the major use of the Jalview platform?

Jalview is a free, open source program developed for the interactive editing, analysis and visualization of multiple sequence alignments. It can also work with sequence annotation, secondary structure information, phylogenetic trees and 3D molecular structures.

How do I open Jalview?

Press F2 to enter Keyboard Mode

1. If you use Java Web Start to launch Jalview, then on some versions of Java Webstart you can start up Jalview with a specific file by typing:
2. If you installed the InstallAnywhere version of Jalview you can run the application binary with additional arguments.

What is FASTA in bioinformatics?

FASTA format is a text-based format for representing either nucleotide sequences or peptide sequences, in which base pairs or amino acids are represented using single-letter codes. A sequence in FASTA format begins with a single-line description, followed by lines of sequence data.

What does FASTA stand for?

FASTA is pronounced “fast A”, and stands for “FAST-All”, because it works with any alphabet, an extension of the original “FAST-P” (protein) and “FAST-N” (nucleotide) alignment tools.

How do you do a mortise view?

Patient position

1. the patient may be supine or sitting upright with the leg straightened on the table.
2. the leg must be rotated internally 15° to 20°, thus aligning the intermalleolar line parallel to the detector.
3. internal rotation must be from the hip; isolated rotation of the ankle will result in a non-diagnostic image.

How do I take Broden’s view?

Patient position

1. patient is supine or seated with the affected limb extended.
2. the posterior aspect of the ankle is resting on the image receptor.
3. the affected leg must be rotated 45° internally.
4. foot should be in neutral dorsiflexion.

What is hind foot valgus?

Hindfoot valgus refers to malalignment of the hindfoot in which the mid-calcaneal axis is deviated away from the midline of the body. On the DP view, this results in an increase in the angle between the mid-calcaneal axis and the mid-talar axis (talocalcaneal angle) 1.

How Jalview is important in bioinformatics?

Jalview is a piece of bioinformatics software that is used to look at and edit multiple sequence alignments. The program was originally written by Michele Clamp whilst working in Geoff Barton’s group at the University of Oxford and European Bioinformatics Institute (EBI).

How do I download Jalview for Mac?

Control-click the install-jalview package and select the “Open Package Contents” option. Double click on ‘install-jalview’ (or ‘install’, for older Jalviews) – this will open up a terminal window with some commands that execute the installer program.

How do I uninstall Jalview?

Open the Control Panel and go to Programs→Programs and Features→Uninstall a program. Select Jalview 2.11. 1.0 from the program list and then click on the Uninstall/Change button above the list. This will launch Jalview’s uninstall wizard, follow the instructions.

How to break a view’s alignment?

To break a view’s alignment: 1 Right-click inside the view boundary. 2 Select Alignment > Break Alignment, or click Tools > Align Drawing View > Break Alignment.#N#To break a view’s alignment… More

What is multiple alignment viewer?

A multiple alignment viewer. MView reformats the results of a sequence database search (BLAST, FASTA, etc) or a multiple alignment (MSF, PIR, CLUSTAL, etc) adding optional HTML markup to control colouring and web page layout.

What is an aligned view in OpenView?

View Alignment Alignment is the constraint relationship between a dependent view and its parent view. An aligned view can be moved only within its constraints. If the parent view is moved, the aligned view moves to maintain its alignment.

Can I change the orientation or alignment of a view?

If appropriate, you can change the alignment or orientation of views placed in the drawing. Alignment is the constraint relationship between a dependent view and its parent view. An aligned view can be moved only within its constraints.